leekgroup / phenopredict
Use gene expression to predict phenotype sample information
☆19Updated 7 years ago
Alternatives and similar repositories for phenopredict:
Users that are interested in phenopredict are comparing it to the libraries listed below
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 4 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 3 months ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 5 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Independent Hypothesis Weighting☆15Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 5 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆24Updated 4 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Sample code for ldsc analyses in UKBB☆30Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Interactive benchmarking of ranking and assignment methods☆14Updated 2 months ago
- ☆19Updated 7 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 2 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago