seqan / needleLinks
A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
☆14Updated this week
Alternatives and similar repositories for needle
Users that are interested in needle are comparing it to the libraries listed below
Sorting:
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆39Updated 4 years ago
- ☆28Updated 6 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated last week
- Filter of Pairwise Alignement☆44Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ☆24Updated 2 months ago
- ☆14Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Find Unique genomic Regions☆30Updated last week
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- ☆15Updated 7 years ago
- ☆14Updated 5 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- SeqOthello supports fast coverage query and containment query.☆12Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 7 months ago
- sunburst plots for taxonomy - working to update Krona☆41Updated last month
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago