cheuerde / cpgen
Parallel Genomic evaluations in R
☆17Updated 5 months ago
Alternatives and similar repositories for cpgen:
Users that are interested in cpgen are comparing it to the libraries listed below
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Updated 4 months ago
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆21Updated 6 months ago
- R package to estimate kinship and FST from SNP data☆20Updated 5 months ago
- ☆43Updated last month
- Mixed models @lme4 + custom covariances + parameter constraints☆52Updated 4 years ago
- Process MS results in R, in a tidy way☆17Updated 6 years ago
- QTL analysis in diallel populations☆11Updated last year
- This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…☆16Updated last month
- QTL mapping in outcrossing species using CIM☆9Updated last year
- Fitting latent factor mixed models☆12Updated 4 years ago
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆16Updated 6 years ago
- lme4 for Genomic Selection☆17Updated 3 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆28Updated 2 weeks ago
- A Framework for Coalescent Simulation in R☆23Updated last year
- Effective Computing—Resources for Computational Biologists☆26Updated 4 years ago
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- R functions related to pedigrees☆11Updated 8 months ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆68Updated 10 months ago
- Statistical GENetics Input/Output Functions☆18Updated last month
- Tao Yan's Plot Toolkit☆11Updated 5 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆12Updated 3 years ago
- Multivariate Gaussian Models for Genomic and Pedigree Data☆12Updated 4 years ago
- R package to model and simulate admixed populations☆8Updated last year
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Updated 2 months ago
- An R package to help in plotting PCA results nicely.☆13Updated 5 years ago
- asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models☆19Updated last month
- Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]☆17Updated last year
- https://filippob.github.io/introduction_to_gwas/☆19Updated 8 months ago
- QTL analysis software for high-dimensional data and complex cross designs☆34Updated 2 weeks ago
- Package for multi-environment trial analysis☆34Updated 5 months ago