WeersmaLabIBD / MicrobiomeLinks
Microbiome research
☆21Updated 3 years ago
Alternatives and similar repositories for Microbiome
Users that are interested in Microbiome are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 weeks ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 7 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- ☆14Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆14Updated 9 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- ☆12Updated 7 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 9 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- ☆24Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆19Updated 11 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆13Updated 5 years ago
- Linear Decomposition Model☆24Updated 2 years ago
- ☆16Updated last month
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- Microbiota Analysis in R Easily☆11Updated 3 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago