WeersmaLabIBD / MicrobiomeLinks
Microbiome research
☆21Updated 3 years ago
Alternatives and similar repositories for Microbiome
Users that are interested in Microbiome are comparing it to the libraries listed below
Sorting:
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 7 years ago
- ☆14Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 10 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- R shiny app for interactive microbiome analysis☆56Updated 4 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Visualization tool for genetic reassortment☆21Updated 6 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- ☆24Updated 5 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Processing support for Greengenes2☆13Updated 2 years ago
- ☆15Updated 2 years ago
- ☆12Updated 8 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 4 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- ☆41Updated 7 years ago