WeersmaLabIBD / Microbiome
Microbiome research
☆20Updated 2 years ago
Alternatives and similar repositories for Microbiome
Users that are interested in Microbiome are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 weeks ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- ☆14Updated 3 years ago
- ☆12Updated 7 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- tidyMicro GitHup Repository☆17Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 11 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Microbiome profiling☆16Updated last week
- ☆15Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Processing support for Greengenes2☆12Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆13Updated 7 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Python wrapper for ipath3☆10Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- ☆41Updated 7 years ago