Statistical Analysis of Metagenomic Profiles
☆94Jan 26, 2026Updated 3 months ago
Alternatives and similar repositories for STAMP
Users that are interested in STAMP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code, unit tests, and tutorials for running PICRUSt2☆386Nov 27, 2025Updated 5 months ago
- ☆43Nov 20, 2017Updated 8 years ago
- Metagenomics Analysis Tools☆24May 7, 2018Updated 8 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 2 months ago
- The MG-RAST Backend -- the API server☆46Apr 27, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Classifier for metagenomic sequences☆275Apr 15, 2026Updated 3 weeks ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 2 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- Interactively explore metagenomes and more from a web browser.☆501Dec 22, 2021Updated 4 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆278Jan 13, 2026Updated 3 months ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Qiita - A multi-omics databasing effort☆131Apr 23, 2026Updated 2 weeks ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆711Oct 28, 2025Updated 6 months ago
- 🌈 Interactive analysis of metagenomics data☆448Sep 17, 2025Updated 7 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated 10 months ago
- Versatile open-source tool for microbiome analysis☆745Updated this week
- ☆15Oct 7, 2025Updated 7 months ago
- Curated Metagenomic Data of the Human Microbiome☆154Apr 29, 2026Updated last week
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- Functions for compositional analysis of high throughput sequencing☆29Dec 8, 2023Updated 2 years ago
- A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools☆16Oct 11, 2017Updated 8 years ago
- A complete pipeline for metagenomic analysis☆442Apr 29, 2026Updated last week
- Miscellaneous functions for metagenomic analysis.☆54Apr 14, 2026Updated 3 weeks ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆647Feb 27, 2026Updated 2 months ago
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 13 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Apr 29, 2026Updated last week
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆528May 1, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Docker for MetaboAnalyst 4.0☆25Nov 16, 2020Updated 5 years ago
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 6 months ago
- Analysis of Composition of Microbiomes☆11Jun 17, 2016Updated 9 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Apr 25, 2025Updated last year
- REference Sequence annotation and CuRatIon Pipeline☆98Apr 16, 2026Updated 3 weeks ago
- KBase distribution module for RASTtk.☆13Sep 14, 2020Updated 5 years ago