donovan-h-parks / STAMPLinks
Statistical Analysis of Metagenomic Profiles
☆93Updated 5 years ago
Alternatives and similar repositories for STAMP
Users that are interested in STAMP are comparing it to the libraries listed below
Sorting:
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Updated 3 weeks ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆161Updated 2 weeks ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 3 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆83Updated 2 months ago
- ☆77Updated last year
- ☆84Updated last year
- Course material for the metagenomics course☆44Updated 3 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year
- A tutorial on methods of 16S analysis with QIIME 1☆70Updated 6 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆128Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- ☆62Updated 5 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆104Updated 5 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆145Updated 10 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- ☆56Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆119Updated this week
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last week
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆44Updated this week
- web documentation for Trinotate☆48Updated 2 years ago