batmen-lab / SGPvalueLinks
☆13Updated last year
Alternatives and similar repositories for SGPvalue
Users that are interested in SGPvalue are comparing it to the libraries listed below
Sorting:
- TransAnnot - a fast transcriptome annotation pipeline☆20Updated 11 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 8 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- Genomic sequence aligner☆33Updated 2 months ago
- ☆31Updated 4 years ago
- ☆43Updated last year
- ☆13Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 months ago
- ☆19Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 11 months ago
- De novo VIral Genome Annotator☆23Updated last year
- ☆23Updated 2 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated last month
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 2 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- software to identify primers that can distinguish genomes☆20Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated last month
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆15Updated last month
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 4 months ago
- some useful scripts for working with genomics and sequencing data☆17Updated 6 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated last month
- A pipeline for whole genome assembly☆16Updated 3 years ago