KoslickiLab / YACHTLinks
A mathematically characterized hypothesis test for organism presence/absence in a metagenome
☆33Updated this week
Alternatives and similar repositories for YACHT
Users that are interested in YACHT are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 7 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Recombination-free trees☆62Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- Microbial agile accurate SNP Typer☆29Updated last year
- Genome size estimation from long read overlaps☆74Updated last week
- Remove human reads from a sequencing run☆45Updated last week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 4 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 4 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 10 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆109Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated this week
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Extract subsets of ONT (Nanopore) reads based on time☆23Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 6 months ago
- Plasmid analysis using rearrangement distances☆48Updated 3 months ago
- viralFlye pipeline☆18Updated last year