KoslickiLab / YACHTLinks
A mathematically characterized hypothesis test for organism presence/absence in a metagenome
☆32Updated last month
Alternatives and similar repositories for YACHT
Users that are interested in YACHT are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated 2 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Recombination-free trees☆60Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Plasmid analysis using rearrangement distances☆45Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- Colinear block visualisation tool☆31Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago
- viralFlye pipeline☆18Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 8 months ago
- ☆24Updated 8 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆62Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆99Updated 3 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- software to identify primers that can distinguish genomes☆20Updated 8 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- Remove human reads from a sequencing run☆40Updated 2 months ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Population analysis PIPEline 🛠🧬☆22Updated 5 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago