A mathematically characterized hypothesis test for organism presence/absence in a metagenome
☆34Mar 12, 2026Updated last week
Alternatives and similar repositories for YACHT
Users that are interested in YACHT are comparing it to the libraries listed below
Sorting:
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Genomic sequence aligner☆33Mar 12, 2026Updated last week
- ☆14Oct 14, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆240Oct 12, 2025Updated 5 months ago
- Precise host read removal☆119Sep 4, 2025Updated 6 months ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 2 months ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 3 months ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 2 months ago
- ☆11Mar 10, 2024Updated 2 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆82Mar 12, 2026Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆86Mar 12, 2026Updated last week
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated 11 months ago
- ☆25Jun 20, 2023Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- Pan-Genomic Matching Statistics☆55Apr 3, 2024Updated last year
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆34Mar 27, 2024Updated last year
- Approximate nearest neighbour search for microbial genomes based on hash metric☆62Mar 7, 2026Updated 2 weeks ago
- ☆81Mar 13, 2026Updated last week
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 5 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Mar 7, 2025Updated last year
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆42Updated this week
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆295Nov 10, 2025Updated 4 months ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- More scalable dereplication for metagenome assembled genomes☆78Mar 8, 2026Updated last week