Alternatives and similar repositories for population-diffusions

Users that are interested in population-diffusions are comparing it to the libraries listed below

• openproblems-bio / neurips2021-notebooks
  ☆30Updated 3 years ago
• berenslab / ne-spectrum
  Attraction-Repulsion Spectrum in Neighbor Embeddings
  ☆31Updated 3 years ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆68Updated last year
• Genentech / sVAE
  ☆63Updated 2 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆42Updated 2 years ago
• solevillar / scGeneFit-python
  Python code for genetic marker selection using linear programming
  ☆42Updated last year
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆43Updated last week
• welch-lab / MichiGAN
  Learning disentangled representations of single-cell data for high-quality generation
  ☆16Updated last year
• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated last year
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆19Updated last year
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆77Updated last year
• KrishnaswamyLab / TrajectoryNet
  TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics
  ☆126Updated last year
• hyhuang00 / scRNA-DR2020
  Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"
  ☆14Updated last year
• ioanabica / DiffVAE
  Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…
  ☆18Updated 5 years ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆89Updated 7 months ago
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 4 years ago
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆26Updated 2 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆63Updated last year
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆36Updated last year
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆57Updated 6 years ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆76Updated last year
• causalbench / causalbench
  ☆52Updated 4 months ago
• eugenelin1 / DRA
  ☆17Updated 5 years ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated 2 years ago
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆30Updated 2 years ago
• aristoteleo / dynamo-tutorials
  Tutorials on using latest dynamo package
  ☆24Updated 3 months ago
• ManchesterBioinference / GrandPrix
  GrandPrix
  ☆16Updated 6 years ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆22Updated 8 months ago
• welch-lab / VeloVAE
  Deep Generative Modeling of RNA Velocity
  ☆35Updated last week
• biomed-AI / GraphSCC
  single-cell RNA-seq clustering
  ☆10Updated 5 years ago