Alternatives and similar repositories for population-diffusions

Users that are interested in population-diffusions are comparing it to the libraries listed below

• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated last year
• openproblems-bio / neurips2021-notebooks
  ☆30Updated 3 years ago
• KrishnaswamyLab / TrajectoryNet
  TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics
  ☆125Updated last year
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆42Updated 2 years ago
• Genentech / sVAE
  ☆63Updated 2 years ago
• atong01 / MultiscaleEMD
  Multiscale earth mover's distance methods for tree and manifold structured data
  ☆12Updated 7 months ago
• KrishnaswamyLab / MIOFlow
  ☆30Updated 2 weeks ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆65Updated last year
• rs239 / schema
  Framework for integrating heterogeneous modalities of data
  ☆17Updated 3 years ago
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆76Updated last year
• berenslab / ne-spectrum
  Attraction-Repulsion Spectrum in Neighbor Embeddings
  ☆31Updated 3 years ago
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆22Updated 6 months ago
• causalbench / causalbench
  ☆51Updated 3 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆146Updated 11 months ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆22Updated 7 months ago
• blengerich / drpca
  Differential Robust PCA
  ☆13Updated 3 years ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆89Updated 6 months ago
• zifanzhu / DeepLINK
  Deep Large-Scale Inference UsingKnockoffs
  ☆11Updated 3 years ago
• openproblems-bio / neurips2021_multimodal_topmethods
  ☆78Updated 3 years ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆57Updated 6 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆63Updated last year
• quadbio / latent-lego
  Latent spaces for single cells
  ☆21Updated last year
• Genentech / dcdfg
  ☆26Updated 3 years ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆75Updated last year
• ioanabica / DiffVAE
  Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…
  ☆18Updated 5 years ago
• welch-lab / MichiGAN
  Learning disentangled representations of single-cell data for high-quality generation
  ☆16Updated last year
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated 2 years ago
• klarman-cell-observatory / Perturb-CITE-seq
  ☆15Updated 3 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago