JaneliaSciComp / exllsm-circuit-reconstructionLinks
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
☆13Updated 2 months ago
Alternatives and similar repositories for exllsm-circuit-reconstruction
Users that are interested in exllsm-circuit-reconstruction are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- MethodsJ2☆14Updated 3 years ago
- StarDist plugin for napari☆38Updated 10 months ago
- ABBA, controlled from python☆13Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated 11 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- Lectures for a napari training course☆50Updated last year
- ☆36Updated 3 weeks ago
- Process images using SimpleITK in napari☆21Updated last month
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 8 months ago
- ☆20Updated 4 years ago
- GIve easy, high-level access to ome-zarr fileset☆17Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 8 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆25Updated 9 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- A platform for compiling, analyzing, and exploring tracking data☆45Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 7 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 2 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated 2 weeks ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month