Alternatives and similar repositories for exllsm-circuit-reconstruction

Users that are interested in exllsm-circuit-reconstruction are comparing it to the libraries listed below

• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆27Updated 2 years ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last year
• mobie / mobie-viewer-fiji
  ☆41Updated last week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 3 months ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated last week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated last month
• BIOP / abba_python
  ABBA, controlled from python
  ☆17Updated last month
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated 2 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 5 years ago
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆18Updated 3 months ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆25Updated last month
• MIAnalyzer / MIA
  Microsopic Image Analyzer (MIA)
  ☆28Updated 4 months ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆11Updated 2 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆13Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆91Updated 3 weeks ago
• chanzuckerberg / napari-plugin-alfa-cohort
  Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration
  ☆11Updated 4 years ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 10 months ago
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆18Updated 2 years ago
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated 3 weeks ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 4 years ago
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 4 years ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆25Updated last year
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆19Updated 5 months ago
• sebi06 / napari_zeiss
  Use Napari Viewer to display CZI images
  ☆11Updated 3 years ago
• PolusAI / nyxus
  A fully scalable robust image feature extraction library.
  ☆28Updated 3 weeks ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆45Updated 8 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆27Updated this week