JaneliaSciComp / exllsm-circuit-reconstruction
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
☆13Updated 2 weeks ago
Alternatives and similar repositories for exllsm-circuit-reconstruction:
Users that are interested in exllsm-circuit-reconstruction are comparing it to the libraries listed below
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- MethodsJ2☆14Updated 2 years ago
- Lectures for a napari training course☆50Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- GIve easy, high-level access to ome-zarr fileset☆14Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated 2 weeks ago
- An Ilastik-like interactive pixel classifier.☆16Updated 7 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- ABBA, controlled from python☆11Updated last month
- Command-line client for Fractal☆45Updated last week
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated last week
- StarDist plugin for napari☆38Updated 8 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Easily read and write ome-tiff images in python☆27Updated 11 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 3 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 5 months ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- A relabeling tool for tiled segmentation with Dask☆16Updated 7 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆20Updated 3 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 2 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated 2 weeks ago
- python tools for BigDataViewer☆22Updated 3 months ago
- Tools for distributed alignment of massive images☆81Updated last week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆38Updated 9 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago