Alternatives and similar repositories for BigStitcher-Spark:

Users that are interested in BigStitcher-Spark are comparing it to the libraries listed below

• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆28Updated 3 weeks ago
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆14Updated 2 years ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆34Updated 2 months ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated 2 months ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆20Updated 2 months ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated 3 months ago
• fmi-faim / napari-psf-analysis
  A napari plugin to analysis point spread functions.
  ☆9Updated 3 months ago
• QI2lab / OPM
  Control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated last week
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆12Updated 2 weeks ago
• haesleinhuepf / napari-plot-profile
  ☆17Updated 2 years ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆22Updated 5 months ago
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆16Updated last week
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆69Updated last week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 6 months ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆35Updated last week
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆12Updated this week
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated last year
• abcucberkeley / PetaKit5D
  ☆38Updated 2 months ago
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last month
• maurosilber / binlets
  Denoising via adaptive binning.
  ☆12Updated 7 months ago
• guiwitz / napari-convpaint
  Segment images by pixel classification based on pre-trained convolutional layer feature extraction
  ☆28Updated 3 weeks ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆41Updated 3 months ago
• biovoxxel / bv3dbox
  The known BioVoxxel Toolbox functions now improved for 2D and 3D images
  ☆15Updated 3 weeks ago
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆22Updated 3 years ago
• sebi06 / napari_zeiss
  Use Napari Viewer to display CZI images
  ☆11Updated 2 years ago
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆27Updated last week
• haesleinhuepf / devbio-napari
  ☆46Updated 4 months ago
• acquire-project / acquire-python
  Acquire: a multi-camera video streaming software focusing on microscopy
  ☆18Updated 3 months ago
• weigertlab / napari-trackastra
  napari plugin for trackastra
  ☆13Updated 3 months ago
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆26Updated last week