JaneliaSciComp / BigStitcher-SparkLinks
Running compute-intense parts of BigStitcher distributed
☆27Updated last week
Alternatives and similar repositories for BigStitcher-Spark
Users that are interested in BigStitcher-Spark are comparing it to the libraries listed below
Sorting:
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆91Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- python tools for BigDataViewer☆22Updated 10 months ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- ☆36Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 7 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 2 months ago
- Browse your OMERO database from within napari.☆39Updated 2 weeks ago
- ☆51Updated 6 months ago
- ☆14Updated 3 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆22Updated 11 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 2 weeks ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆88Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 6 months ago
- ☆12Updated 2 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- ☆37Updated 2 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated 4 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 2 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 6 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- napari plugin for trackastra☆17Updated this week