JaneliaSciComp / BigStitcher-Spark
Running compute-intense parts of BigStitcher distributed
☆24Updated this week
Alternatives and similar repositories for BigStitcher-Spark:
Users that are interested in BigStitcher-Spark are comparing it to the libraries listed below
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- python tools for BigDataViewer☆22Updated 2 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last month
- ImageJ convenience layer for N5☆16Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- Browse your OMERO database from within napari.☆36Updated this week
- ☆23Updated 6 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆13Updated last week
- ☆17Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated 3 weeks ago
- Denoising via adaptive binning.☆12Updated 8 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated this week
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆67Updated this week
- Image acquisition software for mesoSPIM light-sheet microscopes.☆41Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 7 months ago
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 weeks ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- ☆39Updated last week