Running compute-intense parts of BigStitcher distributed
☆31Aug 7, 2026Updated this week
Alternatives and similar repositories for BigStitcher-Spark
Users that are interested in BigStitcher-Spark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆23Apr 1, 2025Updated last year
- ImgLib2/BDV implementation of Stitching for large datasets☆83Jul 3, 2026Updated last month
- python tools for BigDataViewer☆23Jul 2, 2026Updated last month
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆34Updated this week
- ☆11May 6, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Scalable Optical Flow-based Image Montaging and Alignment☆96Updated this week
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 8 months ago
- scalable multiscale image pyramids in python☆29Updated this week
- ☆116Updated this week
- Tools for distributed alignment of massive images☆95Updated this week
- ☆18Oct 12, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Block-wise operations for large nD volumes☆45Updated this week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆74Updated this week
- ImgLib2-based viewer for registered SPIM stacks and more☆44Jul 23, 2026Updated 2 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆34Updated this week
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- Block-wise task scheduling for large nD volumes.☆32Updated this week
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 15, 2026Updated last month
- Various parts made for fluorescence microscopy + optics work☆19Jul 22, 2019Updated 7 years ago
- Software for camera acquisition and tracking of particles☆11Nov 22, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Janelia Workstation☆28Jul 28, 2026Updated last week
- ☆55Jul 27, 2026Updated last week
- Not HDF5☆204Jul 28, 2026Updated last week
- ImageJ convenience layer for N5☆21Jun 29, 2026Updated last month
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- ilastik plugin for napari☆15Mar 2, 2026Updated 5 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- ☆18Nov 25, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 6 years ago
- An image processing package for removing streaks from SPIM images☆46May 14, 2024Updated 2 years ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 6 years ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated 2 years ago
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆133Jul 2, 2026Updated last month
- ☆12Feb 23, 2026Updated 5 months ago
- Browse, share, and publish OME-Zarr data☆29Updated this week