marrlab / BaSiC
A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
☆56Updated last month
Alternatives and similar repositories for BaSiC:
Users that are interested in BaSiC are comparing it to the libraries listed below
- A general illumination correction method for optical microscopy.☆40Updated 3 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last week
- Three-dimensional residual channel attention networks☆51Updated 2 years ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆39Updated 5 months ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆46Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆70Updated last week
- Dataset EXploration & Processing☆32Updated last year
- Combined Repos from DAIN and Zooming SlowMo☆20Updated last year
- ☆71Updated 3 weeks ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- A napari plugin for clustering objects according to their properties.☆83Updated this week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆27Updated 7 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆31Updated 2 weeks ago
- MSSR Plugin☆13Updated 5 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 7 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Lattice light-sheet post-processing utility.☆28Updated last week
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated this week
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- ☆28Updated 2 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 4 months ago
- Official implementation of the Optica 2018 paper "Deep-STORM: super-resolution single-molecule microscopy by deep learning"☆56Updated 4 years ago