juglab / labkit-ui
Advanced Tool for Labeling And Segmentation
☆36Updated 6 months ago
Alternatives and similar repositories for labkit-ui:
Users that are interested in labkit-ui are comparing it to the libraries listed below
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Running compute-intense parts of BigStitcher distributed☆26Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated this week
- StarDist plugin for napari☆38Updated 8 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 6 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆83Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆56Updated 2 weeks ago
- GPU-accelerated image processing for everyone☆52Updated 9 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 10 months ago
- MethodsJ2☆14Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- ☆23Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Lectures for a napari training course☆50Updated last year
- Process images using SimpleITK in napari☆20Updated 6 months ago
- ☆35Updated last week
- ☆38Updated 9 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆24Updated 7 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 3 weeks ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated 3 weeks ago