juglab / labkit-uiLinks
Advanced Tool for Labeling And Segmentation
☆39Updated 10 months ago
Alternatives and similar repositories for labkit-ui
Users that are interested in labkit-ui are comparing it to the libraries listed below
Sorting:
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆82Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- ☆37Updated 3 weeks ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 3 months ago
- Cookiecutter for napari plugins☆69Updated 9 months ago
- GPU-accelerated Image Processing library for Python☆51Updated this week
- The ImageJ plugin to run deep-learning models☆98Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- Lectures for a napari training course☆50Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago
- Tools for distributed alignment of massive images☆86Updated 2 weeks ago
- Process images using SimpleITK in napari☆21Updated 3 months ago
- A self-supervised denoising algorithm.☆27Updated last year
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆67Updated 2 weeks ago
- StarDist plugin for napari☆40Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 5 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last week
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 3 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 11 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 3 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago