a free, open-source web app for annotating, training, and evaluating image understanding algorithms
☆25Nov 23, 2021Updated 4 years ago
Alternatives and similar repositories for piximi_old
Users that are interested in piximi_old are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 4 months ago
- GPU-accelerated image processing using CLIJ via pyimagej in python☆10Jan 8, 2021Updated 5 years ago
- The Java library to run Deep Learning models☆34May 14, 2026Updated last week
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- ☆10Nov 29, 2024Updated last year
- ☆24Sep 13, 2025Updated 8 months ago
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- ☆44May 16, 2026Updated last week
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- a python module to download Broad Bioimage Benchmark Collection images☆24Mar 15, 2019Updated 7 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 5 months ago
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 5 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- AutoTx - an intelligent background file transfer service for Windows.☆28Mar 25, 2026Updated last month
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Course on Deep Learning for imaging using PyTorch☆14Feb 2, 2022Updated 4 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated 11 months ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Apr 9, 2020Updated 6 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated last month
- ImJoy: Deep Learning Made Easy!☆190Oct 12, 2023Updated 2 years ago
- ImageJ plugins to run ilastik workflows☆28Mar 9, 2026Updated 2 months ago
- Generate markdown notebooks from ImageJ Macro☆27Mar 17, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- clEsperanto - GPU-accelerated image processing across languages and platforms☆11Feb 13, 2021Updated 5 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆20Nov 18, 2025Updated 6 months ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated last month
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- Resources for teaching/preparing to teach bioimage analysis☆62Updated this week