piximi / piximi_old
a free, open-source web app for annotating, training, and evaluating image understanding algorithms
☆25Updated 3 years ago
Alternatives and similar repositories for piximi_old:
Users that are interested in piximi_old are comparing it to the libraries listed below
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆29Updated 3 months ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated last month
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 3 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- imaging demos☆9Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆52Updated this week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- A stable diffusion demo for napari☆11Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- python tools for BigDataViewer☆21Updated last month
- Process images using SimpleITK in napari☆19Updated 3 months ago
- A fully scalable robust image feature extraction library.☆20Updated last week
- ☆34Updated this week
- ☆20Updated last year
- MethodsJ2☆14Updated 2 years ago
- A python library for advanced lattice light-sheet image analysis☆21Updated 4 years ago
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆38Updated 6 months ago
- Lectures for a napari training course☆50Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 5 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated last month
- ☆36Updated last month
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago