citiususc / BigSeqKitLinks
BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
☆56Updated 2 years ago
Alternatives and similar repositories for BigSeqKit
Users that are interested in BigSeqKit are comparing it to the libraries listed below
Sorting:
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- Interactive phylogenetic tree viewer/editor☆48Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- ☆29Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated 2 weeks ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- ☆42Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 11 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated this week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Updated last year
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆39Updated 2 weeks ago
- ☆45Updated 2 weeks ago