citiususc / BigSeqKit
BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
☆56Updated last year
Alternatives and similar repositories for BigSeqKit:
Users that are interested in BigSeqKit are comparing it to the libraries listed below
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆23Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆58Updated 4 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆41Updated last month
- ☆24Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 5 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆35Updated 4 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆45Updated 2 years ago
- new repo☆27Updated 3 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆51Updated 2 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated last month
- python plotly Circos from VCF☆31Updated 7 months ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- This repository hosts a large collection of Nextflow snippets☆57Updated this week
- An R package designed for drawing gene arrow maps☆41Updated last week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 7 months ago
- ☆41Updated 2 months ago
- Creating alignment plots from bam files☆56Updated this week
- A method of assessing sequence complexity based on kmer frequencies☆30Updated 6 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆23Updated 8 months ago
- Influenza genome analysis Nextflow workflow☆24Updated 3 weeks ago
- ☆35Updated last year
- A catalogue of available long read sequencing data analysis tools☆75Updated 3 weeks ago