citiususc / BigSeqKitLinks
BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
☆55Updated last year
Alternatives and similar repositories for BigSeqKit
Users that are interested in BigSeqKit are comparing it to the libraries listed below
Sorting:
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆52Updated 2 weeks ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆60Updated 9 months ago
- ☆28Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated 2 weeks ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆52Updated 7 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆47Updated 6 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆77Updated 3 months ago
- tree visualization for tree + annotation data☆39Updated last week
- ☆27Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆42Updated 3 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated last month
- Bacterial GWAS analysis☆40Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated 2 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆23Updated this week
- An R package designed for drawing gene arrow maps☆79Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated this week
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago