Subsampling of high-throughput sequencing count data
☆20May 10, 2019Updated 6 years ago
Alternatives and similar repositories for subSeq
Users that are interested in subSeq are comparing it to the libraries listed below
Sorting:
- logistic factor analysis☆16Jan 29, 2026Updated last month
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability☆14Dec 16, 2023Updated 2 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 5 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆13Updated this week
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- add DNA sequence motifs to ggplot☆13Jun 20, 2018Updated 7 years ago
- ☆12Sep 4, 2019Updated 6 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Sep 7, 2019Updated 6 years ago
- My notes/usage examples for various Bioconductor packages☆15Jan 9, 2017Updated 9 years ago
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆26Jan 7, 2025Updated last year
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Feb 16, 2026Updated last month
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Jul 24, 2017Updated 8 years ago
- ☆15Jul 25, 2025Updated 7 months ago
- R package for creating hammock plots and parallel sets plots using the ggplot2 framework.☆40Sep 4, 2025Updated 6 months ago
- Statistical Inference for Unsupervised Learning☆16Feb 26, 2026Updated 3 weeks ago
- ☆14Dec 21, 2022Updated 3 years ago
- ☆26Oct 15, 2020Updated 5 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Nov 20, 2025Updated 3 months ago
- A light-weight HTML lab notebook generator☆18Jun 16, 2023Updated 2 years ago
- R package of utilities for handling paths, files and directories☆18Jan 14, 2019Updated 7 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 6 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- R code for calculating the Science-wise False Discovery Rate☆27Sep 4, 2017Updated 8 years ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆49Jan 1, 2020Updated 6 years ago
- An Easy to Use Analysis System for All Human Public bulk RNAseq Data!☆18Dec 8, 2022Updated 3 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- a deep-learning-based framework for studying m6A☆21Jul 25, 2024Updated last year
- Lightweight Iterative Gene set Enrichment in R☆59Oct 3, 2024Updated last year
- Tools for visualizing genomics data☆69Oct 26, 2021Updated 4 years ago
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated last month
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Dec 12, 2018Updated 7 years ago
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- ☆11Feb 6, 2023Updated 3 years ago
- ☆15Apr 26, 2022Updated 3 years ago