StoreyLab / subSeq

Related projects: ⓘ

• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 5 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 3 months ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 5 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 8 years ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆12Updated 2 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆20Updated 7 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 6 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 4 years ago
• davemcg / awesome_genome_browsers
  ☆10Updated 5 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 10 months ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• nickloman / ebov
  Ebola virus surveillance
  ☆16Updated 8 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆16Updated 2 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 5 years ago
• datacarpentry / rnaseq-data-analysis-ARCHIVED
  ☆10Updated 9 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated last year
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 3 years ago
• vsbuffalo / rna-seq-example
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆16Updated 12 years ago
• DarwinAwardWinner / CD4-csaw
  Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
  ☆16Updated 5 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 6 years ago
• your-highness / normR
  Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
  ☆11Updated 2 years ago
• hlilab / hlilab.github.io
  ☆15Updated 2 weeks ago
• favorov / stereogene
  ☆12Updated last month
• statOmics / stageR
  stageR package
  ☆11Updated last year
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 5 years ago
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated last year
• sarbal / AuPairWise
  ☆12Updated 4 years ago