A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
☆70Aug 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for NSForest
Users that are interested in NSForest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆22Aug 17, 2026Updated last week
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated 2 years ago
- EDGE☆15Aug 30, 2020Updated 6 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Apr 24, 2021Updated 5 years ago
- ☆17Oct 18, 2023Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆112Oct 27, 2023Updated 2 years ago
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- Draft cell type definitions from data - candidates for inclusion in CL☆12Jul 8, 2025Updated last year
- ☆50Mar 1, 2018Updated 8 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆33Nov 14, 2022Updated 3 years ago
- ☆14Dec 24, 2021Updated 4 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Apr 30, 2026Updated 4 months ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Aug 11, 2022Updated 4 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Jun 24, 2026Updated 2 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated 11 months ago
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 4 years ago
- Metacell - Single-cell mRNA Analysis☆123Updated this week
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago
- Single cell trajectory detection☆333Jul 15, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis for BICCN cross-species primary motor cortex project☆23Feb 13, 2024Updated 2 years ago
- Memory-efficient single-cell analysis in Python. Stream RNA, ATAC, CITE-seq and multi-omics from local or remote Zarr stores, from laptop…☆124Updated this week
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- An actionable database of publicly available single-cell RNA-seq data☆41Apr 13, 2019Updated 7 years ago
- covolutional neural network based coexpression analysis☆79Jun 13, 2020Updated 6 years ago
- ☆46Apr 27, 2026Updated 4 months ago