This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"
☆13Sep 3, 2021Updated 4 years ago
Alternatives and similar repositories for depmap-analysis
Users that are interested in depmap-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A shiny-based web tool for interactive analysis of DepMap data☆25Feb 13, 2021Updated 5 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- Rocking R at UMCCR☆10Oct 11, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R Deep Learning Projects, published by Packt☆22Jan 30, 2023Updated 3 years ago
- ☆11Jan 20, 2020Updated 6 years ago
- ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data☆17Jul 13, 2020Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆32Oct 29, 2025Updated 8 months ago
- 🍱 R implementation for selected machine learning methods with deep learning frameworks (Keras, Tensorflow)☆46Mar 18, 2019Updated 7 years ago
- ☆13Jun 18, 2026Updated last month
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- broom helpers for decision tree methods (rpart, randomForest, and more!)☆29Apr 30, 2025Updated last year
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- R Deep Learning Cookbook, published by Packt☆31Apr 22, 2026Updated 3 months ago
- Implementations of survival models in R☆59Jul 1, 2024Updated 2 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆19May 31, 2024Updated 2 years ago
- Cytoscape interface to STRING and STITCH☆11May 9, 2025Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆38Sep 16, 2025Updated 10 months ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆21Feb 16, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Readme☆10Mar 15, 2020Updated 6 years ago
- ☆27Oct 23, 2025Updated 9 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- An R package for handling and analysing imaging mass cytometry data☆33May 19, 2026Updated 2 months ago
- An R package for working with phenotypic screening data☆10Nov 22, 2018Updated 7 years ago
- ☆11Aug 21, 2018Updated 7 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- 🤠 📿 The Highly Adaptive Lasso☆49Nov 19, 2024Updated last year
- An R package for plotting microtitre plates☆56Mar 7, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆12Updated this week
- Intro to R and RStudio for Genomics☆33Jun 9, 2026Updated last month
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆163Dec 25, 2025Updated 7 months ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- Using Pubmed data and tf.keras to predict if an ophthalmology paper will make it into a top 15 journal☆10May 4, 2020Updated 6 years ago