kenichi-shimada / depmap-analysis
This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"
☆13Updated 3 years ago
Alternatives and similar repositories for depmap-analysis:
Users that are interested in depmap-analysis are comparing it to the libraries listed below
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated last week
- ☆16Updated last month
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- ☆15Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆29Updated 6 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆29Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆25Updated last year
- ☆36Updated 9 months ago
- XEnograft Visualization & Analysis☆11Updated 3 weeks ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆24Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆47Updated 3 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆31Updated 9 months ago
- repository for the single cell RNA-Seq workshop☆27Updated 3 years ago
- The R Bioconductor package for scMAGeCK.☆12Updated 11 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago