AllenInstitute / abc_atlas_accessLinks
Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
☆81Updated last week
Alternatives and similar repositories for abc_atlas_access
Users that are interested in abc_atlas_access are comparing it to the libraries listed below
Sorting:
- Repository for storing prototype functionality implementations for the BKP☆33Updated this week
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated last week
- Cytograph version used for adult human-brain analysis☆87Updated 2 months ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆114Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆86Updated last year
- Spatial analysis of FISH data☆31Updated 3 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Web application demonstrating 3D modeling of spatial transcriptomics☆21Updated 8 months ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆30Updated 11 months ago
- ☆40Updated 2 years ago
- ☆49Updated 2 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 2 months ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- ☆35Updated last year
- Human cortical cell types☆24Updated 6 years ago
- ☆16Updated last year
- ☆52Updated 4 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- ☆27Updated 10 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated last month
- trajectory inference☆104Updated 7 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated 2 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated this week
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆130Updated 2 weeks ago
- ☆37Updated 3 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated last month
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago