Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
☆121Sep 17, 2026Updated this week
Alternatives and similar repositories for abc_atlas_access
Users that are interested in abc_atlas_access are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for storing prototype functionality implementations for the BKP☆55Aug 14, 2026Updated last month
- ☆50Mar 1, 2018Updated 8 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆23Aug 17, 2026Updated last month
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Jun 15, 2018Updated 8 years ago
- Human cortical cell types☆25Aug 21, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Nov 13, 2018Updated 7 years ago
- ABBA, controlled from python☆21Jul 22, 2026Updated last month
- iterative clustering pipeline of big single cell datasets.☆40Sep 5, 2025Updated last year
- Cytograph version used for adult human-brain analysis☆102Jun 5, 2026Updated 3 months ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated 11 months ago
- ☆14Feb 21, 2023Updated 3 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆21Apr 14, 2026Updated 5 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- developmental cortical propagation detection + analyses☆10Jan 16, 2023Updated 3 years ago
- computes intrinsic cell features from intracellular electrophysiology data☆31Aug 14, 2026Updated last month
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Sep 8, 2026Updated last week
- Urai AE, de Gee JW, Tsetsos K, Donner TH (2019) Choice history biases subsequent evidence accumulation. eLife☆16Jul 20, 2020Updated 6 years ago
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated last year
- Toolbox for performing gene set enrichment analysis in Matlab (including ensemble enrichment)☆18Nov 5, 2023Updated 2 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆14Updated this week
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆35Jan 2, 2026Updated 8 months ago
- ☆31Aug 4, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Aug 27, 2023Updated 3 years ago
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Jul 24, 2026Updated last month
- ☆48Jun 27, 2023Updated 3 years ago
- CloudReg☆11Apr 5, 2024Updated 2 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆37Sep 21, 2021Updated 4 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆18Apr 18, 2023Updated 3 years ago
- ☆12Jul 25, 2019Updated 7 years ago
- Core tools for Cocoan Lab☆25Sep 9, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Create cisTarget databases☆63Jun 18, 2025Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 10 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- ☆139Jun 10, 2022Updated 4 years ago
- ☆13Jun 15, 2024Updated 2 years ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- ☆173Jul 3, 2024Updated 2 years ago