AllenInstitute / abc_atlas_accessLinks
Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
☆76Updated 2 weeks ago
Alternatives and similar repositories for abc_atlas_access
Users that are interested in abc_atlas_access are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 2 months ago
- Repository for storing prototype functionality implementations for the BKP☆27Updated 2 weeks ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- ☆48Updated last week
- Human cortical cell types☆24Updated 5 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆113Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 3 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆23Updated 7 years ago
- Spatial analysis of FISH data☆30Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆80Updated last year
- ☆39Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- Integrative Analyses across 388 human brain samples at single-cell resolution☆16Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆62Updated last month
- ☆52Updated 4 years ago
- Cytograph version used for adult human-brain analysis☆84Updated last week
- ☆49Updated 7 years ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆20Updated 7 years ago
- ☆32Updated 10 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- ☆27Updated 8 months ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆81Updated 10 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated last week
- ☆16Updated 10 months ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Example vignette for dotdotdot software☆18Updated 4 years ago
- ☆53Updated last year