AllenInstitute / abc_atlas_access
Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
☆52Updated this week
Related projects ⓘ
Alternatives and complementary repositories for abc_atlas_access
- Single cell RNA-seq analysis for transcriptomic type characterization☆30Updated this week
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆41Updated 8 months ago
- ☆45Updated 7 months ago
- Repository for storing prototype functionality implementations for the BKP☆18Updated last week
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆54Updated last month
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆24Updated 2 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆69Updated 11 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆47Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- Human cortical cell types☆24Updated 5 years ago
- Spatial analysis of FISH data☆28Updated 5 months ago
- ☆34Updated this week
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆20Updated 7 years ago
- ☆14Updated 3 months ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 6 years ago
- ☆29Updated last year
- ☆29Updated 6 months ago
- ☆47Updated 6 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆45Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆28Updated this week
- ☆24Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆70Updated 2 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆46Updated this week
- iterative clustering pipeline of big single cell datasets.☆26Updated last week
- Single-Cell Clustering Assessment Framework☆93Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- ☆28Updated last month
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆15Updated 3 years ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆23Updated 2 months ago
- ☆48Updated 3 years ago