AllenInstitute / abc_atlas_accessLinks
Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
☆90Updated last week
Alternatives and similar repositories for abc_atlas_access
Users that are interested in abc_atlas_access are comparing it to the libraries listed below
Sorting:
- Repository for storing prototype functionality implementations for the BKP☆36Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 2 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Spatial analysis of FISH data☆33Updated 6 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Cytograph version used for adult human-brain analysis☆91Updated 5 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆34Updated last year
- ☆41Updated 2 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆118Updated 3 months ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆22Updated 11 months ago
- ☆51Updated this week
- ☆52Updated 4 years ago
- ☆36Updated 3 weeks ago
- Multiome GRN inference.☆131Updated last year
- ☆27Updated last year
- Spatial mapping of cell types by integration of transcriptomics data☆98Updated 3 years ago
- Human cortical cell types☆25Updated 6 years ago
- ☆56Updated last year
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆131Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 5 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆139Updated last week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆148Updated 11 months ago
- Nonnegative spatial factorization for multivariate count data☆61Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- trajectory inference☆105Updated 9 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆142Updated last week