Alternatives and similar repositories for abc_atlas_access:

Users that are interested in abc_atlas_access are comparing it to the libraries listed below

• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆36Updated this week
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆24Updated last week
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆44Updated last year
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆29Updated 9 months ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 6 months ago
• pachterlab / LP_2021
  ☆46Updated 11 months ago
• AllenInstitute / MTG_celltypes
  Human cortical cell types
  ☆24Updated 5 years ago
• linnarsson-lab / brainmap
  Allen Brain Atlas utilities, parsers and data structures
  ☆11Updated 7 years ago
• ZhuangLab / MERFISH_analysis
  Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
  ☆50Updated 3 years ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆76Updated last year
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆60Updated this week
• AllenInstitute / tasic2018analysis
  Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
  ☆24Updated 6 years ago
• devsystemslab / snapseed
  ☆14Updated last year
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆15Updated 4 years ago
• Wei-BioMath / NeuronChat
  ☆33Updated last year
• CaiGroup / seqFISH-PLUS
  ☆49Updated 3 years ago
• jn-goe / gruffi
  Granular Functional Filtering (Gruffi) to isolate stressed cells
  ☆13Updated 4 months ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆15Updated last year
• iancovert / persist
  ☆15Updated 7 months ago
• HiDiHlabs / ssam
  ☆27Updated 5 months ago
• felixhorns / FlyPN
  Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)
  ☆20Updated 7 years ago
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 3 years ago
• xleizi / easySCF
  ☆38Updated 3 months ago
• gersteinlab / PsychENCODE_SingleCell_Integrative
  Integrative Analyses across 388 human brain samples at single-cell resolution
  ☆14Updated last year
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated 8 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 9 months ago
• seqscope / STtools
  ☆10Updated 2 years ago
• BrainStOrmics / Spaco
  Spatially constrained color profiling for visualizing single-cell resolution spatial data
  ☆24Updated 6 months ago
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 2 years ago
• maggiecrow / MetaNeighbor
  ☆49Updated 7 years ago