sanger-pathogens / ivaLinks
de novo virus assembler of Illumina paired reads
☆58Updated 4 years ago
Alternatives and similar repositories for iva
Users that are interested in iva are comparing it to the libraries listed below
Sorting:
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated 2 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Visualize whole genome alignments as linear maps☆74Updated 3 weeks ago
- De novo Extraction of Strains from MetAgeNomes☆72Updated 5 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆99Updated 3 years ago
- Interactive visualization of assembly graphs☆83Updated 3 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆66Updated 2 years ago
- ☆84Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 4 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Automatically exported from code.google.com/p/prottest3☆37Updated 8 years ago
- Split Kmer Analysis☆67Updated 3 years ago
- Long-read metagenomic analysis☆109Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- ONT assembly and Illumina polishing pipeline☆87Updated 5 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago