Virus discovery
☆17Aug 10, 2026Updated this week
Alternatives and similar repositories for dark-matter
Users that are interested in dark-matter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago
- Fast inference for Generalised Linear Mixed Models.☆14Jan 17, 2025Updated last year
- Galaxy tools and wrappers for sequence analysis☆17Jun 11, 2024Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Apr 2, 2021Updated 5 years ago
- ☆22Aug 5, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for visualizing and comparing data from vertebrate retinas☆14Jan 20, 2025Updated last year
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated 10 months ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated 5 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Python code to generate BEAST2 XML files☆23May 6, 2026Updated 3 months ago
- A reference viral database (RVDB)☆27Nov 30, 2018Updated 7 years ago
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆37Dec 21, 2023Updated 2 years ago
- Classifier for metagenomic sequences☆30Nov 12, 2018Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- My attempt at participating in some mutant form of Tidy Tuesday.☆12Dec 9, 2019Updated 6 years ago
- https://twitter.com/christinezhang/status/1015204671265308673☆12Jul 6, 2018Updated 8 years ago
- University of Cincinnati ggplot2 workshop☆10Apr 16, 2019Updated 7 years ago
- Tutorial for visualising admixture on a map☆25Jan 4, 2021Updated 5 years ago
- R package to run BEAST2☆11Dec 8, 2025Updated 8 months ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 3 years ago
- Python code to print the structure of a JSON object☆21Apr 3, 2017Updated 9 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Applied Quantitative Methods course at the College of Charleston☆21Apr 2, 2026Updated 4 months ago
- Pyro models of SARS-CoV-2 variants☆80Jul 26, 2024Updated 2 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 10 months ago
- This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…☆14Jun 26, 2019Updated 7 years ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆22Updated this week
- Inference framework for serological data☆20Jul 16, 2026Updated 3 weeks ago
- Solutions for exercises in Master the Tidyverse☆16Dec 11, 2017Updated 8 years ago
- BEAST analysis backing effective linguistics☆12Jul 6, 2026Updated last month
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆44Aug 3, 2026Updated last week
- Ebola virus surveillance☆15Aug 28, 2016Updated 9 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- A Tutorial Introduction to R☆16Sep 6, 2023Updated 2 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- A python library for accessing 2bit files☆21Apr 21, 2026Updated 3 months ago