yyoshiaki / VIRTUSLinks
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
☆36Updated 3 years ago
Alternatives and similar repositories for VIRTUS
Users that are interested in VIRTUS are comparing it to the libraries listed below
Sorting:
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- ☆34Updated 2 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆19Updated 2 years ago
- interactive plots for differential expression analysis☆34Updated 7 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- ☆33Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆23Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- An R interface to the MEME Suite☆54Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Updated 6 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated 3 weeks ago
- ☆39Updated 7 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆22Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 5 months ago