Alternatives and similar repositories for Multi-Omics-Cancer-Benchmark

Users that are interested in Multi-Omics-Cancer-Benchmark are comparing it to the libraries listed below

• cantinilab / momix-notebook
  ☆66Updated 2 years ago
• haiyang1986 / Subtype-GAN
  a deep learning approach for integrative cancer subtyping of multi-omics data
  ☆39Updated last year
• CNRGH / crimmix
  ☆17Updated 6 years ago
• jianhuupenn / ItClust
  Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
  ☆54Updated 7 months ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆56Updated 3 years ago
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆122Updated 6 years ago
• danro9685 / CIMLR
  Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s…
  ☆19Updated 2 years ago
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆88Updated last year
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆85Updated 2 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated last year
• txWang / BERMUDA
  BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
  ☆31Updated 6 years ago
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆128Updated last year
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆30Updated last year
• eleozzr / desc
  Deep Embedding for Single-cell Clustering
  ☆89Updated last year
• jasonHKU0907 / FutureHealthProteomicPrediction
  ☆46Updated last year
• PeterZZQ / scMoMaT
  ☆21Updated last year
• ttgump / scDeepCluster
  scDeepCluster for Single Cell RNA-seq data
  ☆105Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• ELELAB / TCGAbiolinks_examples
  repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks
  ☆16Updated 3 years ago
• LieberInstitute / HumanPilot
  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
  ☆91Updated last year
• jacoblevine / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆141Updated 5 years ago
• BatzoglouLabSU / SIMLR
  Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…
  ☆114Updated 3 months ago
• WangShuxiong / SoptSC
  SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …
  ☆22Updated 5 years ago
• xuyungang / scIGANs
  Generative adversarial networks for single-cell RNA-seq imputation
  ☆39Updated 5 years ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• saorisakaue / GREP
  GREP: Genome for REPositioning drugs
  ☆43Updated 3 years ago
• favilaco / deconv_benchmark
  ☆59Updated 5 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• maxconway / SNFtool
  Similarity Network Fusion
  ☆37Updated 10 years ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆79Updated 5 years ago