BrendelGroup / SRAssembler
Selective and Recursive local Assembler
☆15Updated 3 years ago
Alternatives and similar repositories for SRAssembler:
Users that are interested in SRAssembler are comparing it to the libraries listed below
- ☆26Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Find Unique genomic Regions☆29Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- ☆24Updated last month
- Convert genbank files to a swath of other formats☆16Updated last year
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Linear-time de novo Long Read Assembler☆39Updated 2 months ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆11Updated 7 months ago
- ☆29Updated last year
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Updated 6 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆57Updated 11 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- ☆28Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 7 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 6 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 3 months ago
- ☆26Updated 5 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated 9 months ago
- ☆20Updated 2 years ago
- finding conserved regions in highly diverse genomes☆16Updated 7 months ago
- Validate and edit small eukaryotic genome assemblies☆31Updated last year
- ☆25Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago