keylabivdc / VIPLinks
☆25Updated 8 years ago
Alternatives and similar repositories for VIP
Users that are interested in VIP are comparing it to the libraries listed below
Sorting:
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆63Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 9 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 10 months ago
- ☆20Updated 8 years ago
- Main development repository for SpreadGL☆19Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago