keylabivdc / VIP
☆25Updated 8 years ago
Alternatives and similar repositories for VIP:
Users that are interested in VIP are comparing it to the libraries listed below
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- StrainFinder☆26Updated 6 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- ☆52Updated 3 years ago
- Estimate metagenomic coverage and sequence diversity☆49Updated 8 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- ☆26Updated 5 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- metag-rev-sup☆22Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 4 months ago
- Metagenomic binning suite☆29Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- ☆36Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- ☆26Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago