keylabivdc / VIPLinks
☆25Updated 8 years ago
Alternatives and similar repositories for VIP
Users that are interested in VIP are comparing it to the libraries listed below
Sorting:
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Simulate metagenomic short reads from one or more populations.☆26Updated 5 months ago
- Find Unique genomic Regions☆30Updated 3 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- SARs-CoV-2 Primer schemes☆16Updated 2 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- ☆26Updated last year
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated 2 years ago
- ☆28Updated 3 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 7 months ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 3 months ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- Metagenomic binning suite☆29Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆40Updated last month
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- ☆53Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago