qiukunlong / seeksvLinks
A bioinformatics tool for SV detection and virus integration discovery
☆20Updated 7 years ago
Alternatives and similar repositories for seeksv
Users that are interested in seeksv are comparing it to the libraries listed below
Sorting:
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- ☆25Updated last year
- Long read to rMATS☆32Updated 2 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- ☆51Updated 6 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- ☆14Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆14Updated last year
- ☆53Updated 2 years ago
- ☆46Updated 5 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 10 months ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago