qiukunlong / seeksvLinks
A bioinformatics tool for SV detection and virus integration discovery
☆21Updated 8 years ago
Alternatives and similar repositories for seeksv
Users that are interested in seeksv are comparing it to the libraries listed below
Sorting:
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated 2 weeks ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- ☆51Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆30Updated 7 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- ☆14Updated 2 years ago
- ☆26Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 6 months ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- BIC@MSKCC Variants Pipeline☆23Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- ☆46Updated 6 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆45Updated 8 years ago