A bioinformatics tool for SV detection and virus integration discovery
☆21Sep 12, 2017Updated 8 years ago
Alternatives and similar repositories for seeksv
Users that are interested in seeksv are comparing it to the libraries listed below
Sorting:
- structure detection program☆18Nov 20, 2024Updated last year
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 4 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- ☆14Oct 14, 2022Updated 3 years ago
- ☆10Jul 15, 2016Updated 9 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 6 months ago
- A software to detect virome-wide integrations☆13Jan 27, 2021Updated 5 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- ☆11Oct 19, 2021Updated 4 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 8 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 8 years ago
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆15Aug 20, 2021Updated 4 years ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- ☆18Jun 23, 2021Updated 4 years ago
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆21Feb 10, 2026Updated 3 weeks ago
- ☆17Oct 31, 2025Updated 4 months ago
- R package: Evolutionary biology in R☆20Updated this week
- Tumor Mutational Burden☆65Feb 17, 2026Updated 2 weeks ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Feb 10, 2022Updated 4 years ago
- ☆13Dec 7, 2021Updated 4 years ago
- SV detection from paired end reads mapping☆118Jul 31, 2019Updated 6 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 5 years ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆21Aug 13, 2024Updated last year
- ☆14Dec 13, 2023Updated 2 years ago
- ☆20Oct 26, 2023Updated 2 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction☆17Mar 23, 2018Updated 7 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 2 years ago
- ☆36Mar 16, 2021Updated 4 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Dec 4, 2017Updated 8 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago