qiukunlong / seeksv
A bioinformatics tool for SV detection and virus integration discovery
☆20Updated 7 years ago
Alternatives and similar repositories for seeksv
Users that are interested in seeksv are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- ☆51Updated 5 years ago
- ☆14Updated 7 years ago
- ☆24Updated 9 months ago
- Long read to rMATS☆31Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- Computes various SV statistics☆14Updated last year
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 11 months ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 7 months ago
- ☆14Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 years ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago