Alternatives and similar repositories for MethyScan

Users that are interested in MethyScan are comparing it to the libraries listed below

• xiaofengsong / IRESfinder

  View on GitHub
  IRESfinder is a python package for the identification of RNA internal ribosome entry site in eukaryotic cell
  ☆20Aug 27, 2021Updated 4 years ago
• chiulab / MSSPE-design

  View on GitHub
  ☆12Jan 29, 2020Updated 6 years ago
• PersonalizedOncology / ClinVAP

  View on GitHub
  Clinical Variant Annotation Pipeline
  ☆10Apr 21, 2020Updated 5 years ago
• zichner / primerDesign

  View on GitHub
  A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
  ☆47May 21, 2017Updated 8 years ago
• AGIScuipeng / PMPrimer

  View on GitHub
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆31May 23, 2024Updated last year
• TheJacksonLaboratory / JAX-CNV

  View on GitHub
  Official code repository for JAX-CNV
  ☆14Jan 16, 2020Updated 6 years ago
• tadKeys / tabsat

  View on GitHub
  Targeted Amplicon Bisulfite Sequencing Analysis Tool
  ☆11May 8, 2019Updated 6 years ago
• GeneFeng / CircSplice

  View on GitHub
  CircSplice
  ☆12Feb 27, 2019Updated 6 years ago
• shihuang047 / re-benchmarking

  View on GitHub
  ☆15Jun 2, 2021Updated 4 years ago
• sirselim / diagnostics_exome_reporting

  View on GitHub
  Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
  ☆14Nov 11, 2019Updated 6 years ago
• widdowquinn / find_differential_primers

  View on GitHub
  Code for design of diagnostic PCR primers, and metabarcoding markers.
  ☆63Nov 7, 2023Updated 2 years ago
• AkshathaPrasanna / Clin-mNGS

  View on GitHub
  Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data
  ☆18Jun 29, 2021Updated 4 years ago
• cphgeno / CNVbench

  View on GitHub
  Benchmarking of CNV calling tools
  ☆18May 18, 2019Updated 6 years ago
• liuhc8 / Aperture

  View on GitHub
  Alignment-free detection of structural variations and viral integrations in circulating tumor DNA
  ☆17Nov 11, 2021Updated 4 years ago
• LalResearchGroup / CNV-clinviewer

  View on GitHub
  ☆18Mar 14, 2022Updated 3 years ago
• Bioconductor / copy-number-analysis

  View on GitHub
  Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
  ☆21Mar 15, 2023Updated 2 years ago
• pughlab / ConsensusCruncher

  View on GitHub
  ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…
  ☆21Sep 28, 2022Updated 3 years ago
• ncomms-20-10056-t / ncomms-20-10056-t

  View on GitHub
  ☆22Jul 2, 2020Updated 5 years ago
• ndbrown6 / MSK-GRAIL-TECHVAL

  View on GitHub
  High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
  ☆22Mar 27, 2020Updated 5 years ago
• qiukunlong / seeksv

  View on GitHub
  A bioinformatics tool for SV detection and virus integration discovery
  ☆21Sep 12, 2017Updated 8 years ago
• jiujiezz / tsnad

  View on GitHub
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆29Aug 10, 2021Updated 4 years ago
• babelomics / SMAca

  View on GitHub
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆23Nov 28, 2025Updated 2 months ago
• carringtonlab / TargetFinder

  View on GitHub
  Plant small RNA target prediction tool
  ☆27Dec 19, 2016Updated 9 years ago
• drmaize / ThermoAlign

  View on GitHub
  ThermoAlign: software for automated primer design
  ☆27Apr 14, 2018Updated 7 years ago
• jason-weirather / CIBERSORT

  View on GitHub
  A shell to facilitate loading / running CIBERSORT software in structured environments
  ☆26May 9, 2018Updated 7 years ago
• namphuon / ViFi

  View on GitHub
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Jul 13, 2021Updated 4 years ago
• ICBI / viGEN

  View on GitHub
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆28Oct 8, 2024Updated last year
• Genotek / ClassifyCNV

  View on GitHub
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆70Jun 26, 2023Updated 2 years ago
• ravel-lab / speciateIT

  View on GitHub
  Fast, accurate taxonomic assignments for the human vaginal microbiota
  ☆11Updated this week
• snewhouse / awesome-genetics-software

  View on GitHub
  A list of cool software for genetic analysis and the like
  ☆12Sep 21, 2018Updated 7 years ago
• KCCG / ClinSV

  View on GitHub
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆75Sep 4, 2024Updated last year
• girirajanlab / CN_Learn

  View on GitHub
  CN-Learn
  ☆30Jan 24, 2020Updated 6 years ago
• biobakery / shortbred

  View on GitHub
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Jan 24, 2025Updated last year
• vplagnol / ExomeDepth

  View on GitHub
  ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
  ☆78Jun 30, 2025Updated 7 months ago
• chiulab / surpi

  View on GitHub
  SURPI
  ☆86May 10, 2016Updated 9 years ago
• treangenlab / Olivar

  View on GitHub
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆37Jan 22, 2026Updated 3 weeks ago
• Tong-Chen / Bioinfo_course_python

  View on GitHub
  ☆31Nov 3, 2025Updated 3 months ago
• ai16azura / azura

  View on GitHub
  Autonomous agents for everyone
  ☆10Jan 9, 2025Updated last year
• snandiDS / prokseq-v2.0

  View on GitHub
  ☆12Apr 5, 2022Updated 3 years ago