bioinfo-ibms-pumc / MethyScan
MethyScan: A tool for methylation specific PCR primer design and evaluation
☆14Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for MethyScan
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Draw Circos in Python☆30Updated 2 years ago
- ☆14Updated 6 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆30Updated 3 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆21Updated 4 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆16Updated 3 years ago
- cnv-seq with custom bugfix☆11Updated 11 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆37Updated last month
- ☆10Updated last year
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 3 years ago
- Long read to rMATS☆31Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- ☆15Updated 4 years ago
- Somatic point mutation caller☆25Updated last week
- fastx-utils using klib☆18Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- HLA typing for Sanger Based Test☆17Updated last year
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 3 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆17Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆20Updated last year
- ☆22Updated 3 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- Workflow for Sequenza, cellularity and ploidy☆18Updated 4 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆18Updated last year