MD-Anderson-Bioinformatics / MBatch
Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage
☆12Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for MBatch
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆9Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- ☆29Updated 6 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆30Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆17Updated last year
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 3 years ago
- ☆40Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- ☆22Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 3 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆11Updated 6 years ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆25Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆29Updated last year
- ☆15Updated last month
- ☆18Updated 8 months ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- ☆15Updated 3 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago