Generate unique KMERs for every contig in a FASTA file
☆49Aug 17, 2022Updated 3 years ago
Alternatives and similar repositories for UniqueKMER
Users that are interested in UniqueKMER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆120Oct 27, 2023Updated 2 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated 9 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Command line tools for CMDB varaints browser☆23May 14, 2024Updated 2 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Kraken2 Server☆23Nov 24, 2025Updated 8 months ago
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Oct 27, 2023Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Jun 25, 2026Updated last month
- ☆11Apr 3, 2023Updated 3 years ago
- viralVerify: viral contig verification tool☆76Feb 19, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆44May 13, 2026Updated 2 months ago
- ☆16Jan 28, 2026Updated 6 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆217Jun 23, 2026Updated last month
- VAPiD: Viral Annotation and Identification Pipeline☆57May 29, 2024Updated 2 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Updated this week
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆178Aug 22, 2024Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated last month
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 6 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 7 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated last week
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 8 years ago