OpenGene / UniqueKMER
Generate unique KMERs for every contig in a FASTA file
☆47Updated 2 years ago
Alternatives and similar repositories for UniqueKMER:
Users that are interested in UniqueKMER are comparing it to the libraries listed below
- ☆25Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Filter SAM file for soft and hard clipped alignments☆47Updated 8 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- perSVade: personalized Structural Variation detection☆38Updated 2 months ago
- Visualize whole genome alignments as linear maps☆70Updated 4 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated 3 weeks ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆40Updated 5 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆62Updated last month
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 4 months ago
- Error correction of ONT transcript reads☆59Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- ☆12Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- A program for assessing the T2T genome continuity☆64Updated 2 months ago