OpenGene / UniqueKMER
Generate unique KMERs for every contig in a FASTA file
☆48Updated 2 years ago
Alternatives and similar repositories for UniqueKMER:
Users that are interested in UniqueKMER are comparing it to the libraries listed below
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆27Updated 3 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆40Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Filter SAM file for soft and hard clipped alignments☆48Updated 11 months ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Evolutionary Transcriptomics with R☆43Updated this week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆66Updated 4 months ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆74Updated 11 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆59Updated 7 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago