smangul1 / ropLinks
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
☆36Updated last year
Alternatives and similar repositories for rop
Users that are interested in rop are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 10 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- simplified cellranger for long-read data☆19Updated 4 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- interactive plots for differential expression analysis☆34Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 2 months ago
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago