smangul1 / ropLinks
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
☆36Updated last year
Alternatives and similar repositories for rop
Users that are interested in rop are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- A comprehensive toolkit for mutational signature analysis☆40Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- interactive plots for differential expression analysis☆34Updated 4 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- simplified cellranger for long-read data☆19Updated 2 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago