Amplicon Sequencing Analysis Pipeline
☆19Sep 12, 2025Updated last year
Alternatives and similar repositories for ASAP
Users that are interested in ASAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 4 years ago
- UPHL's Reference Free Pipeline☆29Sep 4, 2026Updated 2 weeks ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS☆10Oct 31, 2018Updated 7 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 5 years ago
- Nextstrain build for dengue virus☆17Updated this week
- Reference-based consensus creation☆61Updated this week
- Bioinformatics Pipeline and Visualization resources☆67Aug 30, 2024Updated 2 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Sep 2, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Beacon v2 Reference Implementation (API)☆17Dec 13, 2024Updated last year
- ☆14Mar 22, 2018Updated 8 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Sep 8, 2026Updated last week
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 8 years ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated 2 years ago
- Metagenomic Analysis☆11Apr 5, 2021Updated 5 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Jun 14, 2022Updated 4 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆28Aug 2, 2023Updated 3 years ago
- Data Standards Hackathon for NGS based typing.☆14Aug 11, 2026Updated last month
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 4 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- ☆75Jan 23, 2024Updated 2 years ago
- Portal site for all CDCgov projects, https://cdcgov.github.io☆25Jun 10, 2022Updated 4 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 10 months ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆68Updated this week
- ARTIC SARS-CoV-2 workflow and reporting☆52Apr 25, 2025Updated last year
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆16Nov 29, 2021Updated 4 years ago
- Projects to explore detailed outbreak paths. Mostly dataviz using Power BI☆14Oct 19, 2024Updated last year
- ☆16Mar 12, 2026Updated 6 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆166Updated this week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Sep 3, 2026Updated 2 weeks ago