cfarkas / annotate_my_genomesView external linksLinks
A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
☆30Apr 10, 2024Updated last year
Alternatives and similar repositories for annotate_my_genomes
Users that are interested in annotate_my_genomes are comparing it to the libraries listed below
Sorting:
- ☆12Jun 12, 2023Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated last year
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated 9 months ago
- 基因组组装注释流程及脚本☆16Feb 12, 2023Updated 3 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Jan 17, 2024Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Genome annotation pipeline☆65Jun 25, 2024Updated last year
- Repository☆10Oct 23, 2024Updated last year
- ☆27Aug 29, 2025Updated 5 months ago
- ☆17Oct 31, 2025Updated 3 months ago
- ☆29Apr 16, 2023Updated 2 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 8 months ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆66Oct 23, 2025Updated 3 months ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆121Nov 21, 2025Updated 2 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Dec 24, 2025Updated last month
- ☆11Dec 15, 2025Updated last month
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 5 years ago
- All kinds of NGS analysis pipeline☆12Oct 10, 2019Updated 6 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated last month
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Sep 13, 2024Updated last year
- ☆36Nov 30, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated last year
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- I often use some of the self-written programs.☆16Nov 13, 2025Updated 3 months ago
- ☆15Mar 7, 2025Updated 11 months ago
- A Python package with integrated lncRNA prediction methods☆12Feb 17, 2021Updated 4 years ago
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 3 years ago
- GWAS analysis process based on EMMAX software☆18Dec 12, 2023Updated 2 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 3 weeks ago
- Full GATK SNP calling pipeline☆23Oct 30, 2025Updated 3 months ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year