theiagen / public_health_bacterial_genomicsLinks
☆26Updated 2 years ago
Alternatives and similar repositories for public_health_bacterial_genomics
Users that are interested in public_health_bacterial_genomics are comparing it to the libraries listed below
Sorting:
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ☆14Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆39Updated 3 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆37Updated this week
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Read contamination removal☆25Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆22Updated this week
- Microbial agile accurate SNP Typer☆29Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆60Updated this week
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 9 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 6 months ago
- Gene-flank analysis tool☆30Updated 9 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆27Updated 2 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Quality control plotting for long reads☆10Updated last year