theiagen / public_health_bacterial_genomicsLinks
☆26Updated last year
Alternatives and similar repositories for public_health_bacterial_genomics
Users that are interested in public_health_bacterial_genomics are comparing it to the libraries listed below
Sorting:
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated 11 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆28Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated last month
- Microbial agile accurate SNP Typer☆30Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆40Updated last month
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆32Updated 11 months ago
- Influenza genome analysis Nextflow workflow☆23Updated 3 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 4 months ago
- UPHL's Reference Free Pipeline☆26Updated 2 weeks ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆58Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- ☆14Updated 4 years ago
- Gene-flank analysis tool☆28Updated 6 months ago
- Read contamination removal☆25Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 8 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 9 months ago
- strain-level analysis tools☆38Updated 8 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 3 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆28Updated 4 months ago