theiagen / public_health_bacterial_genomicsLinks
☆26Updated 2 years ago
Alternatives and similar repositories for public_health_bacterial_genomics
Users that are interested in public_health_bacterial_genomics are comparing it to the libraries listed below
Sorting:
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- ☆14Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆24Updated 3 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 2 months ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆61Updated last month
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Discover and annotate the virome☆58Updated 2 months ago
- Gene-flank analysis tool☆34Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated last week
- Intra-species bacterial contamination detection☆25Updated 10 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 4 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated last week
- Population analysis PIPEline 🛠🧬☆22Updated 8 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆45Updated 4 months ago