nodrogluap / pokay
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
☆14Updated last month
Alternatives and similar repositories for pokay:
Users that are interested in pokay are comparing it to the libraries listed below
- Systematic ProtEin AnnotatoR☆19Updated 4 months ago
- Intra-species bacterial contamination detection☆25Updated last week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- ☆8Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆35Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 3 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- StrainFinder☆27Updated 6 years ago
- Recombination-free trees☆57Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆34Updated last week
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year
- Influenza genome analysis Nextflow workflow☆26Updated last month
- Colinear block visualisation tool☆30Updated last year
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Gene-flank analysis tool☆27Updated 2 months ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated last month
- frame-shift correction for long-read (meta)genomics☆32Updated last year
- SARS-CoV-2 workflow for nanopore sequence data☆40Updated this week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago