nodrogluap / pokayLinks
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
☆14Updated 4 months ago
Alternatives and similar repositories for pokay
Users that are interested in pokay are comparing it to the libraries listed below
Sorting:
- Systematic ProtEin AnnotatoR☆19Updated 9 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- ☆9Updated 3 years ago
- A selection of short scripts for analyzing microbial genomes☆14Updated 7 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Updated 3 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- ☆31Updated 3 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆23Updated 3 months ago
- source code for SynerClust☆9Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 7 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 6 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆35Updated last week
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Remove host contaminants from sequencing files☆9Updated 5 years ago