WGS-TB / MentaLiSTLinks
The MLST pipeline developed by the PathOGiST research group
☆36Updated 2 years ago
Alternatives and similar repositories for MentaLiST
Users that are interested in MentaLiST are comparing it to the libraries listed below
Sorting:
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Split Kmer Analysis☆66Updated 3 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆60Updated 3 weeks ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- ☆37Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Recombination-free trees☆62Updated 3 months ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- Bifrost graph gene caller.☆96Updated 2 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last week
- Intra-species bacterial contamination detection☆25Updated 10 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- all methods related to Enterobase☆44Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 7 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago