nf-core / viralreconLinks
Assembly and intrahost/low-frequency variant calling for viral samples
☆140Updated last month
Alternatives and similar repositories for viralrecon
Users that are interested in viralrecon are comparing it to the libraries listed below
Sorting:
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆161Updated last week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆140Updated last year
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- Metagenomic classification of long-read sequencing data☆93Updated this week
- A user-friendly workflow for phylogenomics☆219Updated 3 weeks ago
- A robust, extensible metagenomics pipeline☆174Updated this week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆106Updated 2 months ago
- Quality control tools for nanopore sequencing data☆110Updated 10 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- Nanopore demultiplexing, QC and alignment pipeline☆207Updated last month
- Genome Assembly and Annotation Service code☆214Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated 2 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆178Updated last month
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆193Updated last month
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆237Updated last year
- ☆208Updated 3 weeks ago
- ☆73Updated 4 years ago
- Tools for plotting methylation data in various ways☆160Updated 2 weeks ago
- The ARTIC field bioinformatics pipeline☆125Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Bioinformatics Tools☆89Updated this week