Alternatives and similar repositories for viralrecon

Users that are interested in viralrecon are comparing it to the libraries listed below

• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 5 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆175Updated 3 weeks ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆164Updated 3 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆178Updated 2 years ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆149Updated last week
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆167Updated 2 years ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆109Updated last month
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆97Updated last month
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆218Updated last month
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆224Updated 3 weeks ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆144Updated last week
• andersen-lab / ivar
  iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
  ☆131Updated this week
• artic-network / fieldbioinformatics
  The ARTIC fieldbioinformatics pipeline
  ☆127Updated 3 weeks ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆111Updated last year
• wdecoster / chopper
  ☆224Updated last month
• epi2me-labs / wf-basecalling
  ☆47Updated 3 weeks ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆142Updated 2 years ago
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆217Updated 2 years ago
• broadinstitute / viral-ngs
  [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …
  ☆195Updated last year
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆128Updated 3 years ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆198Updated 3 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• artic-network / artic-ncov2019
  ARTIC nanopore protocol for nCoV2019 novel coronavirus
  ☆171Updated 2 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆250Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆205Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆147Updated 3 weeks ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆166Updated last month