nf-core / viralreconLinks
Assembly and intrahost/low-frequency variant calling for viral samples
☆151Updated last month
Alternatives and similar repositories for viralrecon
Users that are interested in viralrecon are comparing it to the libraries listed below
Sorting:
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆175Updated 3 weeks ago
- A user-friendly workflow for phylogenomics☆224Updated 3 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆149Updated last week
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- Pan-genome wide association studies☆205Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆241Updated last year
- ☆75Updated 5 years ago
- Metagenomic classification of long-read sequencing data☆97Updated last month
- A tool to circularize genome assemblies☆250Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Convert various sequence formats to FASTA☆144Updated last week
- Quality control for MinION sequencing data☆217Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆114Updated 9 months ago
- A robust, extensible metagenomics pipeline☆174Updated this week
- ☆225Updated last month
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆218Updated last month
- Short Read Sequence Typing for Bacterial Pathogens☆145Updated 4 years ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 8 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆147Updated 3 weeks ago
- V-pipe is a pipeline designed for analysing NGS data of short viral genomes☆144Updated last month
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆131Updated this week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆198Updated 3 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆128Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year