h3abionet / h3abionet16S
H3ABioNet 16S rDNA diverstity analysis package
☆18Updated 5 years ago
Alternatives and similar repositories for h3abionet16S:
Users that are interested in h3abionet16S are comparing it to the libraries listed below
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- extract SV signal from a BAM☆11Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 4 months ago
- Allele frequency filtering for Mendelian variant discovery☆17Updated 8 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 4 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- vcf file manipulation☆21Updated 9 years ago
- ☆19Updated 8 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- my PhD thesis☆36Updated 5 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago