h3abionet / h3abionet16S
H3ABioNet 16S rDNA diverstity analysis package
☆18Updated 5 years ago
Alternatives and similar repositories for h3abionet16S
Users that are interested in h3abionet16S are comparing it to the libraries listed below
Sorting:
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- ☆23Updated 5 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- full taxonomer cython repository☆22Updated 5 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Updated 4 years ago
- Software for Nanopore Analysis☆10Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- vcf file manipulation☆21Updated 9 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Updated 6 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- An R package for annotation of circular RNAs☆10Updated 5 years ago