h3abionet / h3abionet16SLinks
H3ABioNet 16S rDNA diverstity analysis package
☆19Updated 6 years ago
Alternatives and similar repositories for h3abionet16S
Users that are interested in h3abionet16S are comparing it to the libraries listed below
Sorting:
- ☆13Updated 8 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 8 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Updated 4 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆21Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 8 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated last month
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆12Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 11 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- ☆24Updated 6 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Updated 4 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- ☆37Updated 5 years ago