Influenza genome analysis Nextflow workflow
☆33Sep 15, 2025Updated last year
Alternatives and similar repositories for nf-flu
Users that are interested in nf-flu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jun 1, 2026Updated 4 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Updated this week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆44Oct 7, 2026Updated 3 weeks ago
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆22Oct 20, 2026Updated last week
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Aug 10, 2026Updated 2 months ago
- Computational workflow for virus genome reconstruction☆10Sep 17, 2026Updated last month
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Oct 9, 2026Updated 3 weeks ago
- A tool to aid virus sequencing and accelerate IRMA.☆13Updated this week
- Nextflow version of SNVPhyl☆12Oct 24, 2024Updated 2 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆84Updated this week
- Viral (meta)-genome assembly pipeline.☆24Sep 8, 2026Updated last month
- ☆26Jul 25, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for creating comprehensive viral reference sets.☆12Updated this week
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆58Mar 23, 2026Updated 7 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆41Oct 24, 2026Updated last week
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Repo for PrimerSchemes☆22Updated this week
- ☆13Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference-based consensus creation☆61Updated this week
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆18May 19, 2023Updated 3 years ago
- Bacterial surveillance pipeline.☆30Sep 30, 2026Updated last month
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 5 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Oct 19, 2026Updated last week
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆22Oct 8, 2025Updated last year
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆21Sep 9, 2026Updated last month
- Influenza data pipeline to automate genotyping assignment☆45Sep 10, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- UPHL's Reference Free Pipeline☆29Oct 9, 2026Updated 3 weeks ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆14Sep 26, 2017Updated 9 years ago
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- ☆10Apr 16, 2025Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated 3 weeks ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆65Updated this week