andersgs / harrietrLinks
An `R` package for various phylogenetic and evolutionary biology data manipulations
☆12Updated 7 years ago
Alternatives and similar repositories for harrietr
Users that are interested in harrietr are comparing it to the libraries listed below
Sorting:
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆23Updated 3 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Updated 4 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ☆17Updated last year
- Read contamination removal☆25Updated last year
- De novo VIral Genome Annotator☆23Updated 10 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- ☆22Updated 2 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆22Updated 7 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 7 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 4 months ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 7 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 3 weeks ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago