An `R` package for various phylogenetic and evolutionary biology data manipulations
β12Mar 5, 2018Updated 7 years ago
Alternatives and similar repositories for harrietr
Users that are interested in harrietr are comparing it to the libraries listed below
Sorting:
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assembliesβ12Jun 30, 2023Updated 2 years ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated 11 months ago
- Influenza genome analysis Nextflow workflowβ24Jan 26, 2026Updated last month
- POUTINE: a next-generation homoplasy counting method for genome-wide association studies.β10Mar 9, 2023Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxaβ25May 30, 2023Updated 2 years ago
- β10Dec 22, 2025Updated 2 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Labβ13Feb 9, 2025Updated last year
- β30Mar 6, 2025Updated 11 months ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read dataβ25Jun 11, 2020Updated 5 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analysesβ12Mar 2, 2023Updated 2 years ago
- A MinION-based pipeline for tracking species biodiversityβ13Feb 19, 2024Updated 2 years ago
- C++ tools for NCBI taxonomy tasksβ12Jun 26, 2025Updated 8 months ago
- app to collapse Pango lineages for reportingβ13Dec 9, 2025Updated 2 months ago
- Tool for analysing viral diversity from High Throughput Sequencingβ12Nov 20, 2025Updated 3 months ago
- Inference of putative transmission phylogenetic clustersβ12Oct 13, 2020Updated 5 years ago
- Classify sequencing reads using MinHash.