Automated pipeline for amplicon sequence analysis
☆11Nov 25, 2025Updated 7 months ago
Alternatives and similar repositories for CASCABEL
Users that are interested in CASCABEL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Meta-Omics Software for Community Analysis☆37Jun 4, 2026Updated last month
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 7 years ago
- ☆12Feb 26, 2019Updated 7 years ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆23Sep 27, 2019Updated 6 years ago
- The topics discussed in the Machine Learning SIG group.☆11Feb 11, 2026Updated 5 months ago
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆51Mar 6, 2024Updated 2 years ago
- ☆47Jun 27, 2023Updated 3 years ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 2 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Delve deeper into using R and vegan to analyse complex multivariate community ecology data with this free webinar☆21Jul 9, 2020Updated 6 years ago
- ☆17Sep 20, 2019Updated 6 years ago
- Tool for automated generation of computational workflows.☆21May 6, 2026Updated 2 months ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- a full day lesson material to teach the basics of using a HPC cluster to novices☆36Jun 26, 2019Updated 7 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆21Oct 8, 2025Updated 9 months ago
- Scripts☆10Jun 29, 2016Updated 10 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Look Up Guild Information for Fungi in R☆25Mar 20, 2025Updated last year
- Mapbox Studio style designed for outdoor adventures☆12Dec 2, 2016Updated 9 years ago
- genome sized sequences clustering☆17Dec 29, 2020Updated 5 years ago
- Issues and pull requests for BiocStyle should go here.☆15Apr 29, 2026Updated 2 months ago
- Toolkit for preparing genomes for submission to NCBI☆30Sep 6, 2021Updated 4 years ago
- Defunct. Use https://github.com/Linuxbrew/docker☆14Jun 24, 2016Updated 10 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Jul 30, 2019Updated 6 years ago
- Fast metagenome analysis toolkit☆28Sep 3, 2024Updated last year
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Jun 16, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated last year
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 9 years ago
- MiGA: Microbial Genomes Atlas☆33May 26, 2026Updated last month
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22May 9, 2026Updated 2 months ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Docker way to convert Docsify pages to PDF (with Puppeteer)☆34Nov 17, 2025Updated 8 months ago
- Network analysis and visualization workshop for the vCIES2020☆24Jun 22, 2021Updated 5 years ago