AlejandroAb / CASCABELLinks
Automated pipeline for amplicon sequence analysis
☆10Updated 6 months ago
Alternatives and similar repositories for CASCABEL
Users that are interested in CASCABEL are comparing it to the libraries listed below
Sorting:
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Updated 4 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- Surveillance of pathogens using population genomics and sequencing☆24Updated this week
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- ☆23Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- ☆17Updated 5 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your wo…☆11Updated 11 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆13Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- raw data from tax-credit project☆14Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated last month
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 9 months ago
- Resolving Species Level Classification Using Emu☆12Updated 11 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 6 months ago
- Working with the outputs of sourmash in R☆27Updated last year
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- ☆21Updated 4 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 6 years ago