Alternatives and similar repositories for RabbitQCPlus

Users that are interested in RabbitQCPlus are comparing it to the libraries listed below

• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 4 months ago
• at-cg / RAFT
  ☆28Updated last year
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated 2 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆20Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated 7 months ago
• lmdu / pytrf
  a python package for finding tandem repeats from genomic sequences
  ☆29Updated 6 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆34Updated 2 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 3 months ago
• hitbc / gcSV
  ☆21Updated 6 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated 2 weeks ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• lh3 / gffio
  ☆32Updated 2 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆21Updated 7 years ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆28Updated 3 weeks ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 11 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆31Updated 4 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 3 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆28Updated 3 months ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated last week
• nextgenusfs / redmask
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆18Updated 6 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last month
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆50Updated 6 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆26Updated last year