GATB / gatb-minia-pipelineLinks
GATB Minia assembly pipeline
☆31Updated 2 years ago
Alternatives and similar repositories for gatb-minia-pipeline
Users that are interested in gatb-minia-pipeline are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 6 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- orthology assignment using phylogenetic and network analyses☆49Updated last week
- de.NBI Nanopore Training Course☆20Updated 4 months ago
- ☆26Updated 8 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆63Updated 2 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- ☆53Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- Workflow for detecting genome-wide horizontal gene transfers☆10Updated 7 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago