GATB / gatb-minia-pipelineLinks
GATB Minia assembly pipeline
☆31Updated 2 years ago
Alternatives and similar repositories for gatb-minia-pipeline
Users that are interested in gatb-minia-pipeline are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Visualize whole genome alignments as linear maps☆74Updated 5 months ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- ☆35Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- ☆26Updated 7 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- ☆26Updated 11 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- Improved Phased Assembler☆28Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Ancient microbiome snakemake workflow☆27Updated 9 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 2 weeks ago