Minia is a short-read assembler based on a de Bruijn graph
☆81Dec 27, 2024Updated last year
Alternatives and similar repositories for minia
Users that are interested in minia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GATB Minia assembly pipeline☆32Feb 2, 2023Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆188Jul 30, 2026Updated last month
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 3 years ago
- compacted de Bruijn graph construction in low memory☆101Nov 4, 2025Updated 10 months ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- A fast approximate aligner for long DNA sequences☆291Oct 11, 2024Updated last year
- ☆26Aug 10, 2021Updated 5 years ago
- Yet another k-mer analyzer☆177Dec 30, 2025Updated 8 months ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆20Aug 1, 2023Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Assemble large genomes using short reads☆333Apr 30, 2026Updated 4 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Fast and frugal disk based k-mer counter: counts 55-mers in 36 gzipped FASTQ files totaling 614 GB (WGS paired-end reads of NA12878, Illu…☆341Jul 7, 2026Updated 2 months ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Jun 18, 2026Updated 3 months ago
- ☆21Dec 13, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31May 25, 2026Updated 3 months ago
- Phylogenomics from Low-coverage Whole-genome Sequencing☆43Aug 21, 2020Updated 6 years ago
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- A fast multi-threaded k-mer counter☆552Mar 20, 2024Updated 2 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆358Jul 19, 2025Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- De novo genome assembler for long uncorrected reads☆235Nov 15, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 5 months ago
- ☆16Jan 5, 2018Updated 8 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆120Dec 13, 2024Updated last year
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- k-mer counting software☆43Feb 8, 2022Updated 4 years ago
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆22May 10, 2023Updated 3 years ago