FrederickHuangLin / Microbiome-Review-Code-ArchiveLinks
Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
☆11Updated 5 years ago
Alternatives and similar repositories for Microbiome-Review-Code-Archive
Users that are interested in Microbiome-Review-Code-Archive are comparing it to the libraries listed below
Sorting:
- ☆12Updated 5 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 6 months ago
- ☆20Updated 3 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 2 months ago
- Script and pipeline for BRAINcode project☆17Updated 4 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Updated 4 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated 2 months ago
- An R package for adaptive sum of powered score test(ASPU) in genetic association studies.☆12Updated 4 years ago
- ☆12Updated 9 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15Updated 8 months ago
- Code for fuzzy monkeys.☆15Updated 9 months ago
- countsimQC - Compare characteristic features of count data sets☆30Updated 3 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last year
- Glimma R package☆50Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- ☆13Updated 2 years ago
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆13Updated 10 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆33Updated last year
- Use gene expression to predict phenotype sample information☆19Updated 7 years ago
- Omics Data Analysis Tools☆14Updated last year
- ☆28Updated last year
- R package for plotting 3D graphical visualization of multi-omics data.☆25Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Bioconductor package for management of multi-assay data☆73Updated 2 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago