FrederickHuangLin / Microbiome-Review-Code-ArchiveLinks
Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
☆11Updated 5 years ago
Alternatives and similar repositories for Microbiome-Review-Code-Archive
Users that are interested in Microbiome-Review-Code-Archive are comparing it to the libraries listed below
Sorting:
- Code for fuzzy monkeys.☆15Updated 8 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 5 months ago
- ☆20Updated 2 months ago
- ☆12Updated 9 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Updated 4 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 6 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- ☆12Updated 8 years ago
- ☆12Updated 5 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated 2 months ago
- ☆13Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆22Updated 5 years ago
- Dirichlet-Multinomial Bayesian Variable Selection☆14Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆77Updated 2 months ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- fastqcr: Quality Control of Sequencing Data☆76Updated 2 years ago
- Lesson on data analysis and visualization in R for genomics☆43Updated 6 years ago
- Glimma R package☆50Updated last year
- Analysis with Profile Hidden Markov Models☆22Updated last week
- A Template for Clear and Simple Documentation of Bioinformatics Code☆16Updated 7 years ago
- Script and pipeline for BRAINcode project☆17Updated 4 years ago
- An interactive web application for demonstrating and using phyloseq.☆60Updated 6 years ago
- An R package for adaptive sum of powered score test(ASPU) in genetic association studies.☆12Updated 4 years ago