gibsramen / qupid

Related projects ⓘ

Alternatives and complementary repositories for qupid

• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆22Updated 11 months ago
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆19Updated last year
• biocore / qadabra
  Snakemake workflow for comparison of differential abundance ranks
  ☆13Updated 8 months ago
• cguccione / human_host_filtration
  Pipeline which removes human DNA from microbial shotgun samples.
  ☆11Updated last month
• ParkinsonLab / MetaPro
  ☆18Updated 3 months ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆33Updated 2 years ago
• biocore / evident
  ☆14Updated last year
• kelwyres / Bactabolize
  ☆35Updated 2 weeks ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆11Updated last month
• bluenote-1577 / fairy
  alignment-free coverage calculation for metagenomic binning >100 times faster
  ☆38Updated this week
• microbiome / miaSim
  microbiome data simulation package
  ☆18Updated last month
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆23Updated 3 weeks ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated last month
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆53Updated 4 months ago
• MinJinHa / COZINE
  COmpositional Zero-Inflated Network Estimation
  ☆10Updated last year
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆38Updated last week
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆58Updated last year
• czbiohub-sf / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆36Updated 2 months ago
• ctmrbio / stag-mwc
  StaG Metagenomic Workflow Collaboration
  ☆28Updated 3 months ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆24Updated last year
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• functional-dark-side / agnostos-wf
  ☆43Updated last year
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆64Updated 7 months ago
• ggloor / q2-aldex2
  qiime2 plugin for aldex2 for differential abundance analysis
  ☆10Updated 4 years ago
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆22Updated 2 years ago
• ivlachos / agamemnon
  Accurate metagenomi/metatranscriptomic analysis pipeline
  ☆22Updated 3 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆26Updated last year
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated 10 months ago
• guyleonard / taxdump_edit
  Add new taxa or taxonomic groups to the NCBI Taxdump files
  ☆19Updated 4 years ago
• pbfrandsen / insect_genome_assemblies
  scripts used to download and analyze insect assemblies from GenBank
  ☆14Updated 3 years ago