Case-control matching for microbiome data
☆10Aug 8, 2023Updated 2 years ago
Alternatives and similar repositories for qupid
Users that are interested in qupid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Jun 5, 2026Updated last month
- Snakemake workflow for comparison of differential abundance ranks☆13Mar 22, 2024Updated 2 years ago
- ☆16Apr 10, 2023Updated 3 years ago
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated 11 months ago
- a python package for energy systems modeling and optimization☆30Nov 20, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Software Platform for solving and manipulating multiparametric programs in Python☆45Sep 17, 2025Updated 10 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆88Jul 13, 2026Updated last week
- ☆23Nov 6, 2020Updated 5 years ago
- Generates MinMax polynomial approximations of functions. Stable implementation of the Remez Algorithm using multi-precision arithmetic. A…☆29Jul 26, 2022Updated 3 years ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated 10 months ago
- ☆17May 22, 2023Updated 3 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Updated this week
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Oct 10, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated last year
- Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs☆19Jan 21, 2024Updated 2 years ago
- Nextflow pipeline for the analysis of metagenomic short reads.☆24Jul 3, 2026Updated 3 weeks ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆20Sep 16, 2021Updated 4 years ago
- Here you can find the code for the paper "Training robust neural networks using Lipschitz bounds"☆10Sep 20, 2020Updated 5 years ago
- a tool for annotation of immunoglobulin genes in genome assemblies☆15Sep 22, 2025Updated 10 months ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Github Action to deploy conda package to Anaconda repository☆11May 28, 2021Updated 5 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- From metagenomes to epitopes and beyond☆12Updated this week
- ANnotation-based ANalysis of Specific Interactions☆10Updated this week
- Fast big data XML parser and library, written in Ruby☆18Sep 16, 2015Updated 10 years ago
- Find and decompose genomic variation sites in pangenome graphs☆16Updated this week
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆13Nov 30, 2023Updated 2 years ago
- ☆18Jul 11, 2026Updated 2 weeks ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R functions to detect play jar eye sores☆15Jun 24, 2019Updated 7 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated 2 years ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated 2 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆12Jul 3, 2026Updated 3 weeks ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 6 months ago
- Omics Data Analysis Tools☆14Nov 26, 2024Updated last year