rrwick / Catpac
a Contig Alignment Tool for Pairwise Assembly Comparison
☆13Updated 5 years ago
Alternatives and similar repositories for Catpac:
Users that are interested in Catpac are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- ☆25Updated 3 years ago
- ☆26Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 11 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Convert genbank files to a swath of other formats☆16Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Colinear block visualisation tool☆30Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 7 months ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 4 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago