ahcm / longread_plots
A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.
☆12Updated 2 years ago
Alternatives and similar repositories for longread_plots:
Users that are interested in longread_plots are comparing it to the libraries listed below
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- genomic alignment similarity search tool☆19Updated 9 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- ☆12Updated this week
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 11 months ago
- ☆36Updated 2 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- ☆26Updated 5 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Quality control plotting for long reads☆10Updated 9 months ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆19Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated last month
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆22Updated 10 months ago
- Colinear block visualisation tool☆30Updated last year
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago