ahcm / longread_plotsLinks
A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.
☆12Updated 2 years ago
Alternatives and similar repositories for longread_plots
Users that are interested in longread_plots are comparing it to the libraries listed below
Sorting:
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- genomic alignment similarity search tool☆18Updated 7 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Visualising discordant reads☆15Updated 10 years ago
- ☆12Updated 9 months ago
- ☆37Updated 3 years ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 8 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- finshingTool☆54Updated 9 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- ☆26Updated 10 months ago
- ☆26Updated 6 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago