Arcadia-Science / prehgt
A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT
☆13Updated 7 months ago
Alternatives and similar repositories for prehgt:
Users that are interested in prehgt are comparing it to the libraries listed below
- Calculate assocations between genes and traits☆20Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- Bacterial GWAS analysis☆34Updated last month
- IslandPath standalone software☆31Updated last year
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- ☆18Updated 4 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆33Updated 3 weeks ago
- Prophage Activity Estimator☆26Updated 7 months ago
- ☆16Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- ☆24Updated 6 years ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 6 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆38Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated 3 weeks ago
- Discover and annotate the virome☆35Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 6 years ago