A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT
☆14Aug 26, 2025Updated last year
Alternatives and similar repositories for prehgt
Users that are interested in prehgt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆46Feb 11, 2023Updated 3 years ago
- DarkHorse2 source code☆11May 3, 2022Updated 4 years ago
- Automatic evaluation of HGTs☆32Jan 31, 2025Updated last year
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 5 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline to investigate horizontal gene transfer from NGS data☆27Oct 26, 2026Updated last week
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 5 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆150Sep 21, 2023Updated 3 years ago
- TELOmere SEARCH in Long sequencing Reads☆15Dec 26, 2025Updated 10 months ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 8 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.☆10Jul 23, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 9 years ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 10 months ago
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- A whole-genome reference database of soil bacteria, fungi, and archaea☆14Jun 19, 2026Updated 4 months ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 6 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 10 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆16Jan 21, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Toolchest Python client☆15Sep 6, 2023Updated 3 years ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- ☆40Oct 12, 2026Updated 3 weeks ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- Fast and haplotype-aware assembler☆16Oct 20, 2026Updated last week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated 2 years ago
- ☆10May 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- STAMPS 2018 course☆14Aug 8, 2018Updated 8 years ago
- Telomere compliment tools☆28Nov 17, 2025Updated 11 months ago
- Horizontal gene transfer (HGT) identification pipeline☆74May 17, 2023Updated 3 years ago
- ☆11Apr 11, 2017Updated 9 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆62Jun 4, 2025Updated last year
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 8 years ago