Alternatives and similar repositories for awesome-galaxy

Users that are interested in awesome-galaxy are comparing it to the libraries listed below

• mvdbeek / workflow2executable
  Turn Galaxy Workflows into standalone scripts.
  ☆9Updated 2 years ago
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆12Updated 4 years ago
• ncbi / magicblast
  ☆37Updated 2 months ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆14Updated last year
• ncbi / pipelines
  ☆14Updated 6 years ago
• NBISweden / workshop-genome_assembly
  ☆13Updated 5 years ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆32Updated 3 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated 2 years ago
• NCBI-Hackathons / NovoGraph
  NovoGraph: building whole genome graphs from long-read-based de novo assemblies
  ☆45Updated 4 years ago
• galaxyproject / idc
  Simon's Data Club - Reference data for Galaxy servers
  ☆10Updated last year
• galaxyproject / galaxy-beta1
  Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…
  ☆12Updated 10 years ago
• fls-bioinformatics-core / galaxy-tools
  FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
  ☆14Updated last year
• TGAC / earlham-galaxytools
  Galaxy tools and workflows developed at the Earlham Institute
  ☆14Updated 3 months ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated last year
• ukhsa-collaboration / PHEnix
  Public Health England SNP calling pipeline.
  ☆36Updated 6 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• Illumina / happyR
  R tools to interact with hap.py output
  ☆15Updated 6 years ago
• Ensembl / ensembl-io
  File parsing and writing code for Ensembl
  ☆10Updated this week
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆32Updated last week
• geraldinepascal / FROGS
  FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
  ☆31Updated 2 months ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 7 years ago
• ncbi / rapt
  This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.
  ☆58Updated 3 months ago
• DCGenomics / DangerTrack
  ☆13Updated 8 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated 3 weeks ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆63Updated last month
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆34Updated 3 years ago
• snayfach / IGGsearch
  Metagenomic species profiling with enhanced coverage of the human gut microbiome
  ☆25Updated last year
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated 4 months ago
• nickloman / poredb
  ☆19Updated 8 years ago