drpowell / FriPanLinks
Interactive, web tool for exploring pan-genome of bacterial strains
☆48Updated 2 years ago
Alternatives and similar repositories for FriPan
Users that are interested in FriPan are comparing it to the libraries listed below
Sorting:
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Predict plasmids from uncorrected long read data☆41Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated last week
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 4 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆60Updated last month
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆14Updated 3 years ago
- ☆37Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- Recombination-free trees☆60Updated 2 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Gene-flank analysis tool☆33Updated 11 months ago