[Archived] SnakeMake pipeline to run BlobTools on public assemblies
☆11Jul 3, 2023Updated 2 years ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below
Sorting:
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- ☆11Mar 5, 2025Updated last year
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆13Jan 31, 2025Updated last year
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Mar 7, 2025Updated last year
- PrincetonPy's one-day workshop : Introduction to Python for Scientific Computing☆11Nov 4, 2015Updated 10 years ago
- 💻🔀🗑️ Randomly declutter your computer!☆10Oct 3, 2023Updated 2 years ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 2 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Jul 21, 2025Updated 8 months ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- ☆25Oct 26, 2021Updated 4 years ago
- ☆14Updated this week
- A archive fork from public code in exetools forum☆11Nov 14, 2016Updated 9 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Archived Unity voxel project. GNU General Public License v3.0.☆18Mar 3, 2018Updated 8 years ago
- Public Archive for CSAW 2024 Quals☆11Sep 19, 2024Updated last year
- Allows users to upload, manage, search, and download publications, documents, and similar content (PDF, Power-Point, etc.) in WordPress.☆28Jul 12, 2016Updated 9 years ago
- Public website cyclonedx.org☆12Dec 20, 2024Updated last year
- Convert genbank files to a swath of other formats☆30Mar 3, 2026Updated 2 weeks ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 4 years ago
- Programming exercises to inspire kids to learn to program in a Minecraft type environment☆14Mar 24, 2019Updated 6 years ago
- Misc. utilities☆11May 21, 2019Updated 6 years ago
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆15Feb 12, 2026Updated last month
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 6, 2026Updated 2 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Inventaire des codes sources des organismes publics (archivé)☆18Jan 24, 2019Updated 7 years ago
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 9 months ago
- ☆11Aug 21, 2018Updated 7 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 4 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Jan 3, 2025Updated last year
- Neoblog is a public blogging platform that's completely serverless. This repo is now archived, we're moving this to a Github orga of its …☆18Apr 29, 2018Updated 7 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- CLI tool to annotate genes with KOfam☆92Jun 6, 2023Updated 2 years ago
- ☆21Mar 19, 2025Updated last year